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CNViewer

About this program

This program was designed to to aid the visual identification of regions of LOH and/or CN state that are found in a group of affected individuals and is not present in any unaffected individuals. The program is also able to display allele difference, Log(2) ratio and smooth signal data. CNViewer is designd to work with data derived from Affymetrix's SNP 6.0 chip array and extracted using Affymetrix's Genotyping Console.

insilicase icon This program and its instruction file is currently hosted on my department web site and can obtained from here

Citation

Carr IM, Diggle CP, Khan K, Inglehearn C, McKibbin M, Bonthron DT, Markham AF, Anwar R, Dobbie A, Pena SD, Ali M. (2012). Rapid visualisation of microarray copy number data for the detection of structural variations linked to a disease phenotype. PLoS One. 2012;7(8):e43466.

Computer requirements

This program runs on Microsoft Windows, using the .NET 2.0 environment which can be obtained from here.



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