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AgileGeneFilter

Description

AgileGeneFilter allows sequence variants exported from AgileVariantViewer or AgileAnnotator to be filtered, by first identifying the proteins that are affected by the sequence variants and then performing a textual data search on these proteins, using information downloaded from the UNI-Prot web page. The text search is composed of two parts:

  • Keyword search against the description of the protein's function, structure and cellular localisation as stated by UNI-Prot. The keyword search is also performed against gene name, the protein family's description and the references as used by UNI-Prot
  • Matching gene ontology terms selected by the user against those linked to the protein by UNI-Prot

Guide explaining how to use AgileGeneFilter:

AgileGeneFilter's user guide can be found here.

Download

AgileGeneFilter program can be downloaded here



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