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AgileKnownSNPFilter analyses sequence variants exported by AgileAnnotator and identifies those that have previously been found by the 1000 Genomes Project. Known SNPs will be linked to their RS numbers, and when viewed in AgileVariantViewer, allow the read depth and allele ratio parameters to be set using sequence variants that are known to be real.

Guide to use of AgileKnownSNPFilter

The AgileKnownSNPFilter user guide can be found here.


The AgileKnownSNPFilter program can be downloaded here.

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