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gSNP

About this program

This program calculates allele frequencies for biallelic SNP variants in sequence trace files. The analysis is performed in batches which can contain over 1000 trace files. The program is very similar in structure to QSVanalyser and formed the base for that program, however improvements to QSVanalyser where retro fitted to this program. The program exports the data to a web page which shows an image and calculated genotype of the SNP in each file.

The program is designed to genotype a SNP(s) in a set of PCR products. This could be to either perform a complete SNP genotyping experiment or to screen candidate SNPs in a subset of your samples before committing time to optimising another technique to screen all your samples.

insilicase icon This program can be downloaded here, at the moment it does not have any instructions, but it is very similar to QSVanalyser who's instructions can be found here.

This program has not been published.

Computer requirements

This program runs on Microsoft Windows, using the .NET 2.0 environment which can be obtained from here.



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